No datasets match
  1. decemedip::example.hg19.ref.anc.se
    Subset of hg19.ref.anc.se as a lightweighted example
    rda| rds
    RangedSummarizedExperiment
  2. decemedip::example.hg19.ref.cts.se
    Subset of hg19.ref.cts.se as a lightweighted example
    rda| rds
    RangedSummarizedExperiment
  3. decemedip::example.pdx.counts.anc.se
    Subset of pdx.counts.anc.se as a lightweighted example
    rda| rds
    RangedSummarizedExperiment
  4. decemedip::example.pdx.counts.cts.se
    Subset of pdx.counts.cts.se as a lightweighted example
    rda| rds
    RangedSummarizedExperiment
  5. decemedip::hg19.ref.anc.se
    Hg19 genomic information of anchor CpGs (i.e., all-tissue unmethylated/methylation probes) inferred from DNA methylation atlas published by Moss 2018 Nat. Commun. (https://www.nature.com/articles/s41467-018-07466-6). Used as default in 'decemedip'.
    rda| rds
    RangedSummarizedExperiment
  6. decemedip::hg19.ref.cts.se
    Hg19 genomic information of cell-type-specific marker CpGs inferred from DNA methylation atlas published by Moss 2018 Nat. Commun. (https://www.nature.com/articles/s41467-018-07466-6).
    rda| rds
    RangedSummarizedExperiment
  7. decemedip::hg38.ref.anc.se
    Hg38 genomic information of cell-type-specific marker CpGs inferred from DNA methylation atlas published by Moss 2018 Nat. Commun. (https://www.nature.com/articles/s41467-018-07466-6).
    rda| rds
    RangedSummarizedExperiment
  8. decemedip::hg38.ref.cts.se
    Hg38 genomic information of cell-type-specific marker CpGs inferred from DNA methylation atlas published by Moss 2018 Nat. Commun. (https://www.nature.com/articles/s41467-018-07466-6).
    rda| rds
    RangedSummarizedExperiment
  9. decemedip::pdx.counts.anc.se
    MeDIP-seq read counts on reference anchor CpGs of 3 PDX samples from Berchuck et al. 2022
    rda| rds
    RangedSummarizedExperiment
  10. decemedip::pdx.counts.cts.se
    MeDIP-seq read counts on reference cell type-specific CpGs of 3 PDX samples from Berchuck et al. 2022
    rda| rds
    RangedSummarizedExperiment
  11. dmrseq::annot.chr21
    annot.chr21: Annotation information for chromosome 21, hg38 genome
    rda| rds
    SimpleGRangesList
  12. dmrseq::BS.chr21
    BS.chr21: Whole-genome bisulfite sequencing for chromosome 21 from Lister et al.
    rda| rds
    BSseq
  13. dmrseq::dmrs.ex
    dmrs.ex: Example results of DMRs
    rda| rds
    GRanges
  14. scDD::scDatEx
    Data: Toy example data
    rda| rds
    SingleCellExperiment
  15. scDD::scDatExList
    Data: Toy example data list
    json| rda| rds
    list
  16. scDD::scDatExSim
    Data: Toy example of simulated data
    rda| rds
    SingleCellExperiment
  17. vmrseq::cell_1
    cell_1
    csv| xlsx| json| ndjson| rda| rds
    data.table|10000 x 5
  18. vmrseq::cell_2
    cell_2
    csv| xlsx| json| ndjson| rda| rds
    data.table|10000 x 5
  19. vmrseq::cell_3
    cell_3
    csv| xlsx| json| ndjson| rda| rds
    data.table|10000 x 5
  20. vmrseq::toy.gr
    toy.gr
    rda| rds
    GRanges
  21. vmrseq::toy.results
    toy.results
    rda| rds
    list